首页 文章

在netcdf文件中重命名维度

提问于
浏览
0

我是 nco 的初学者,我希望对我的工作流程提出一些建议,并对我遇到的问题提供一些帮助 .

我有these data,它包含两个不同时间步的3D盐度值:

dimensions:
    t = 780 ;
    z = 54 ;
    y = 450 ;
    x = 3600 ;
variables:
    double time(t) ;
        time:units = "days since 1-1-1 00:00:0.0" ;
    float level(z) ;
        level:units = "[m]" ;
    float lat(y) ;
    float lon(x) ;
    float salt(x, y, z) ;
        salt:units = "psu * 1000 + 35" ;
        salt:missingvalue = "-1.0E34" ;
        salt:longname = "salinity" ;

我想连接两个netcdf文件 .

为此,我首先使用 ncecat *.nc -O merged.nc

dimensions:
    record = UNLIMITED ; // (2 currently)
    t = 780 ;
    z = 54 ;
    y = 450 ;
    x = 3600 ;
variables:
    double time(record, t) ;
        time:units = "days since 1-1-1 00:00:0.0" ;
    float level(record, z) ;
        level:units = "[m]" ;
    float lat(record, y) ;
    float lon(record, x) ;
    float salt(record, x, y, z) ;
        salt:units = "psu * 1000 + 35" ;
        salt:missingvalue = "-1.0E34" ;
        salt:longname = "salinity" ;

现在变量 time 和维度 t 是假的 . 所以,我用 ncks -O -x -v time merged.nc merged.nc 删除它们:

record = UNLIMITED ; // (2 currently)
    y = 450 ;
    z = 54 ;
    x = 3600 ;
variables:
    float lat(record, y) ;
    float level(record, z) ;
        level:units = "[m]" ;
    float lon(record, x) ;
    float salt(record, x, y, z) ;
        salt:units = "psu * 1000 + 35" ;
        salt:missingvalue = "-1.0E34" ;
        salt:longname = "salinity" ;

现在,我想将维度 record 重命名为: ncrename -d record,time merged.nc . 该命令运行时没有错误或警告 . 但当我做 ncdump -h merged.nc 时,我得到了 error

ncdump:merged.nc:NetCDF:HDF错误

这是什么意思?我哪里做错了?

EDIT

按照Charlie Zender发布的答案

ncecat -O -u time *.nc merged.nc
ncks -O -x -v time merged.nc merged.nc

造成:

dimensions:
    time = UNLIMITED ; // (2 currently)
    y = 450 ;
    z = 54 ;
    x = 3600 ;
    t = 780 ;
variables:
    float lat(time, y) ;
    float level(time, z) ;
        level:units = "[m]" ;
    float lon(time, x) ;
    float salt(time, x, y, z) ;
        salt:units = "psu * 1000 + 35" ;
        salt:missingvalue = "-1.0E34" ;
        salt:longname = "salinity" ;
    double time(time, t) ;
        time:units = "days since 1-1-1 00:00:0.0" ;

// global attributes:
        :history = "Tue Jun  5 09:08:25 2018: ncks -O -x -v time merged.nc merged.nc\nTue Jun  5 09:08:19 2018: ncecat -O -u time OFES_salt_mmean_607.nc OFES_salt_mmean_608.nc merged.nc" ;
        :NCO = "netCDF Operators version 4.7.4 (http://nco.sf.net)" ;
        :nco_openmp_thread_number = 1 ;

1 回答

  • 4

    首先,我推荐的命令是

    ncecat -O -u time *.nc merged.nc
    

    这样就无需将 record 重命名为 time . 然后

    ncks -O -x -v time merged.nc merged.nc
    

    那样有用吗?

    回答编辑问题:

    关于使用ncrename收到的错误,您可能遇到了here描述的netCDF4库错误 . 推荐的解决方案是转换为netCDF3,重命名,然后根据需要转换回netCDF4:

    ncks -3 in.nc out.nc
    ncrename -d record,time out.nc
    ncks -4 out.nc out.nc
    

相关问题