我有一个来自svm模型的以下预测(prediction_svm_linear),我想用R中的pROC包绘制ROC曲线 . 我得到AUC 100%,这是不可能的,因为基于混淆矩阵我没有完美的预测 . 显然我遗漏了一些东西,可能我不完全理解ROC曲线是如何工作的,你能不能向我解释为什么会发生这种情况?
Confusion Matrix and Statistics
Reference
Prediction Cancer Normal
Cancer 11 0
Normal 3 5
Accuracy : 0.8421
95% CI : (0.6042, 0.9662)
No Information Rate : 0.7368
P-Value [Acc > NIR] : 0.2227
Kappa : 0.6587
Mcnemar's Test P-Value : 0.2482
Sensitivity : 0.7857
Specificity : 1.0000
Pos Pred Value : 1.0000
Neg Pred Value : 0.6250
Prevalence : 0.7368
Detection Rate : 0.5789
Detection Prevalence : 0.5789
Balanced Accuracy : 0.8929
'Positive' Class : Cancer
这是我的代码:
library(pROC)
testData_class = c(rep(c("Normal", "Cancer"), c(5, 14)))
prediction_svm_linear = data.frame(Cancer = c(0.11766249, 0.04765463, 0.08749940, 0.01715765, 0.10755376, 0.28358435, 0.37478957, 0.90603193, 0.91077112, 0.68602820, 0.64783894, 0.67916187,0.38785763, 0.66440580, 0.51897036, 0.93484214, 0.91719866, 0.83239007, 0.63491027), Normal = c(0.88233751, 0.95234537, 0.91250060, 0.98284235, 0.89244624, 0.71641565, 0.62521043, 0.09396807, 0.08922888, 0.31397180, 0.35216106, 0.32083813,0.61214237, 0.33559420, 0.48102964, 0.06515786, 0.08280134, 0.16760993, 0.36508973))
result.roc.model1 <- roc(testData$class, prediction_svm_linear$Cancer,
levels = rev(levels(testData$class)))
>result.roc.model1
Call:
roc.default(response = testData$class, predictor = prediction.prob.b5_svm_linear$Cancer, levels = rev(levels(testData$class)))
Data: prediction.prob.b5_svm_linear$Cancer in 5 controls (testData$class Normal) < 14 cases (testData$class Cancer).
Area under the curve: 1
2 回答
对不起,我可能会困惑你,但这里是所有的信息
二元预处理:
prediction_svm = c("Normal", "Normal", "Normal", "Normal", "Normal", "Normal", "Normal", "Cancer", "Cancer", "Cancer", "Cancer", "Cancer", "Normal", "Cancer", "Cancer", "Cancer", "Cancer", "Cancer", "Cancer")
基本事实:
testData_class = c(rep(c("Normal", "Cancer"), c(5, 14)))
概率预测
prediction_svm_linear.prob = data.frame(Cancer = c(0.11766249, 0.04765463, 0.08749940, 0.01715765, 0.10755376, 0.28358435, 0.37478957, 0.90603193, 0.91077112, 0.68602820, 0.64783894, 0.67916187,0.38785763, 0.66440580, 0.51897036, 0.93484214, 0.91719866, 0.83239007, 0.63491027), Normal = c(0.88233751, 0.95234537, 0.91250060, 0.98284235, 0.89244624, 0.71641565, 0.62521043, 0.09396807, 0.08922888, 0.31397180, 0.35216106, 0.32083813,0.61214237, 0.33559420, 0.48102964, 0.06515786, 0.08280134, 0.16760993, 0.36508973))
我正在使用此命令构建混淆矩阵:
confusionMatrix(prediction_svm, testData$class)
从您的评论中,我怀疑您滥用
caret
包中的confusionMatrix
函数 . 根据文档,第二个因素应该是“a factor of classes to be used as the true results”,而你的评论表明你正在传递data.frame
连续预测 . 它不仅与所需格式不同,而且也应该是您的第一个参数 .你应该使用这样的东西: