我的模型是U-Net实现 -
from keras.layers import Input, merge, Convolution2D, MaxPooling2D,
UpSampling2D
from keras.optimizers import Adam
from keras.callbacks import ModelCheckpoint, LearningRateScheduler
from keras import backend as K
from keras.models import Model
def seg_score(y_true, y_pred):
smooth = 1.0
y_true_f = K.flatten(y_true)
y_pred_f = K.flatten(y_pred)
intersection = K.sum(y_true_f * y_pred_f)
true_sum = K.sum(y_true_f); pred_sum = K.sum(y_pred_f)
if(true_sum > pred_sum):
max_sum = true_sum
else:
max_sum = pred_sum
return (intersection + smooth) / (max_sum + smooth)
def seg_score_loss(y_true, y_pred):
return -seg_score(y_true, y_pred)
def dice_coef(y_true, y_pred):
smooth = 1.
y_true_f = K.flatten(y_true)
y_pred_f = K.flatten(y_pred)
intersection = K.sum(y_true_f * y_pred_f)
return (2. * intersection + smooth) / (K.sum(y_true_f) + K.sum(y_pred_f) + smooth)
def dice_coef_loss(y_true, y_pred):
return -dice_coef(y_true, y_pred)
def get_unet(num_color_component, dimension):
img_rows = dimension; img_cols = dimension;
inputs = Input((num_color_component, img_rows, img_cols))
conv1 = Convolution2D(32, 3, 3, activation='relu', border_mode='same')(inputs)
conv1 = Convolution2D(32, 3, 3, activation='relu', border_mode='same')(conv1)
pool1 = MaxPooling2D(pool_size=(2, 2))(conv1)
conv2 = Convolution2D(64, 3, 3, activation='relu', border_mode='same')(pool1)
conv2 = Convolution2D(64, 3, 3, activation='relu', border_mode='same')(conv2)
pool2 = MaxPooling2D(pool_size=(2, 2))(conv2)
conv3 = Convolution2D(128, 3, 3, activation='relu', border_mode='same')(pool2)
conv3 = Convolution2D(128, 3, 3, activation='relu', border_mode='same')(conv3)
pool3 = MaxPooling2D(pool_size=(2, 2))(conv3)
conv4 = Convolution2D(256, 3, 3, activation='relu', border_mode='same')(pool3)
conv4 = Convolution2D(256, 3, 3, activation='relu', border_mode='same')(conv4)
pool4 = MaxPooling2D(pool_size=(2, 2))(conv4)
conv5 = Convolution2D(512, 3, 3, activation='relu', border_mode='same')(pool4)
conv5 = Convolution2D(512, 3, 3, activation='relu', border_mode='same')(conv5)
up6 = merge([UpSampling2D(size=(2, 2))(conv5), conv4], mode='concat', concat_axis=1)
conv6 = Convolution2D(256, 3, 3, activation='relu', border_mode='same')(up6)
conv6 = Convolution2D(256, 3, 3, activation='relu', border_mode='same')(conv6)
up7 = merge([UpSampling2D(size=(2, 2))(conv6), conv3], mode='concat', concat_axis=1)
conv7 = Convolution2D(128, 3, 3, activation='relu', border_mode='same')(up7)
conv7 = Convolution2D(128, 3, 3, activation='relu', border_mode='same')(conv7)
up8 = merge([UpSampling2D(size=(2, 2))(conv7), conv2], mode='concat', concat_axis=1)
conv8 = Convolution2D(64, 3, 3, activation='relu', border_mode='same')(up8)
conv8 = Convolution2D(64, 3, 3, activation='relu', border_mode='same')(conv8)
up9 = merge([UpSampling2D(size=(2, 2))(conv8), conv1], mode='concat', concat_axis=1)
conv9 = Convolution2D(32, 3, 3, activation='relu', border_mode='same')(up9)
conv9 = Convolution2D(32, 3, 3, activation='relu', border_mode='same')(conv9)
conv10 = Convolution2D(1, 1, 1, activation='sigmoid')(conv9)
model = Model(input=inputs, output=conv10)
#model.compile(optimizer=Adam(lr=1e-5), loss=seg_score_loss, metrics=[seg_score])
model.compile(optimizer=Adam(lr=1e-5), loss=dice_coef_loss, metrics=[dice_coef])
return model
我收到的错误如下 -
Traceback(最近一次调用最后一次):文件“/home/zaverichintan/Chintan/PycharmProjects/CNN_wbc_identification/train.py”,第60行,在model = mo.get_unet(num_color_component,filter_size);文件“/home/zaverichintan/Chintan/PycharmProjects/CNN_wbc_identification/models.py”,第63行,在get_unet up7 = merge([UpSampling2D(size =(2,2))(conv6),conv3],mode ='concat' ,concat_axis = 1)文件“/home/zaverichintan/anaconda2/lib/python2.7/site-packages/keras/legacy/layers.py”,第456行,合并名称=名称)文件“/ home / zaverichintan / anaconda2 /lib/python2.7/site-packages/keras/legacy/layers.py“,第107行,在init node_indices,tensor_indices中)文件”/home/zaverichintan/anaconda2/lib/python2.7/site-packages/keras/ legacy / layers.py“,第187行,在_arguments_validation中'图层形状:%s'%(input_shapes))ValueError:”concat“模式只能合并具有匹配输出形状的图层(concat轴除外) . 图层形状:[(无,0,16,256),(无,0,16,128)]
将Concat轴更改为3然后我得到了 -
文件“/home/zaverichintan/Chintan/PycharmProjects/CNN_wbc_identification/train.py”,第60行,在model = mo.get_unet(num_color_component,filter_size);文件“/home/zaverichintan/Chintan/PycharmProjects/CNN_wbc_identification/models.py”,第71行,在get_unet up8 = keras.layers.merge([UpSampling2D(size =(2,2))(conv7),conv2],mode ='concat',concat_axis = 1)文件“/home/zaverichintan/anaconda2/lib/python2.7/site-packages/keras/legacy/layers.py”,第456行,合并名称=名称)文件“/ home /zaverichintan/anaconda2/lib/python2.7/site-packages/keras/legacy/layers.py“,第107行,在init node_indices,tensor_indices中)文件”/home/zaverichintan/anaconda2/lib/python2.7/site- packages / keras / legacy / layers.py“,第187行,在_arguments_validation中'图层形状:%s'%(input_shapes))ValueError:”concat“模式只能合并具有匹配输出形状的图层,但concat轴除外 . 图层形状:[(无,0,32,128),(无,1,32,64)]
2 回答
这很简单:
你有 :
他们明确地说形状应该是相同的 except for the concat axis
形状不同的尺寸是第三维(一个是256,另一个是128) . 所以你应该将concat轴设置为3而不是1.如:
我希望这有帮助 :)
您必须按照此处所述设置
image_data_format": "channels_first"
https://keras.io/backend/或将输入更改为然后
concat_axis
必须与数据格式对应 .以下是如何在Keras中实现U-net的示例:https://github.com/jocicmarko/ultrasound-nerve-segmentation/blob/master/train.py#L34